Pre submission updates - #118

Merged

OberonDixon merged 18 commits into

mainfrom

Nov 25, 2025

Commits on Nov 11, 2025

Adjust environment name
OberonDixon
committed
0f55da5
Change default colors closer to those for the manuscript
OberonDixon
committed
f2bc169

Commits on Nov 12, 2025

Add relative=False option (absolute coordinates) for enrichment profiles
OberonDixon
committed
cdf9def
Add support for pseudouridine by supporting mod codes more than one character long
OberonDixon
committed
011da25

Commits on Nov 13, 2025

Improve plot_read_browser customizability
OberonDixon
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9513e7e

Commits on Nov 14, 2025

Commits on Nov 15, 2025

Commits on Nov 19, 2025

ruff format
OberonDixon
committed
72caadf

Commits on Nov 25, 2025

Documentation changes and top-level parameter exposure per PR comments
OberonDixon
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e06fca1
Shorten long lines to see if that helps with ruff format
OberonDixon
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841faf9
ruff format after downgrading to ruff 0.6.8
OberonDixon
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b0b78e0
Update package name and add new kwargs to function descriptions
OberonDixon
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1e8d676
Update kwargs handling to avoid bugs in the collapse sorting case
OberonDixon
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473500b
Fix mistake in removing kwargs in too many places
OberonDixon
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e70da7a
Fix typo and remove personal info
OberonDixon
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ba5b9c4