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  1. kharchenkolab/numbat kharchenkolab/numbat Public

    Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome

    R 214 33

  2. sankaranlab/mitodrift sankaranlab/mitodrift Public

    Reconstructing single-cell lineage history using mitochondrial mutation drift dynamics

    R 10 1

  3. kharchenkolab/hahmmr kharchenkolab/hahmmr Public

    Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq

    R 13

  4. kharchenkolab/scistreer kharchenkolab/scistreer Public

    R/Rcpp implementation of the ScisTree algorithm

    R 7 3