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Cardinal changes - #137

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LArnoldt merged 4 commits into
mainfrom
cardinal_changes
Aug 22, 2026
Merged

Cardinal changes#137
LArnoldt merged 4 commits into
mainfrom
cardinal_changes

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codecov Bot commented Aug 22, 2026

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Codecov Report

❌ Patch coverage is 21.73913% with 270 lines in your changes missing coverage. Please review.
✅ Project coverage is 24.83%. Comparing base (a84430e) to head (0f2495b).
⚠️ Report is 3 commits behind head on main.

Files with missing lines Patch % Lines
src/cellink/tl/external/_scooby.py 4.42% 108 Missing ⚠️
src/cellink/tl/external/_tensorqtl.py 2.38% 82 Missing ⚠️
src/cellink/tl/_coloc.py 23.80% 48 Missing ⚠️
src/cellink/_core/donordata.py 73.33% 12 Missing ⚠️
src/cellink/io/_pgen.py 45.00% 11 Missing ⚠️
src/cellink/io/_sgkit.py 0.00% 4 Missing ⚠️
src/cellink/tl/external/_scprs.py 0.00% 3 Missing ⚠️
src/cellink/resources/_gwas_prs_qtl.py 0.00% 1 Missing ⚠️
src/cellink/tl/_annotate_snps_ensembl_rest.py 50.00% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #137      +/-   ##
==========================================
- Coverage   24.95%   24.83%   -0.13%     
==========================================
  Files          70       71       +1     
  Lines        8620     8908     +288     
==========================================
+ Hits         2151     2212      +61     
- Misses       6469     6696     +227     
Files with missing lines Coverage Δ
src/cellink/io/_readwrite.py 49.33% <100.00%> (+2.85%) ⬆️
src/cellink/pl/_ldsc_magma.py 11.30% <ø> (ø)
src/cellink/tl/__init__.py 100.00% <100.00%> (ø)
src/cellink/tl/_runner.py 14.91% <ø> (ø)
src/cellink/tl/external/__init__.py 57.89% <100.00%> (ø)
src/cellink/tl/external/_gsmap.py 9.21% <ø> (ø)
src/cellink/tl/external/_ldsc2magma.py 21.28% <ø> (ø)
src/cellink/tl/external/_livi.py 11.45% <ø> (ø)
src/cellink/tl/external/_livi_annbatch.py 0.00% <ø> (ø)
src/cellink/tl/external/_magma.py 8.58% <ø> (ø)
... and 13 more
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@LArnoldt
LArnoldt merged commit 9b35781 into main Aug 22, 2026
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