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srData for single trial mic data preprocessing and ridge regression models #3

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srData for single trial mic data preprocessing and ridge regression models #3

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f5d29a5
add notebook (follow strf_nwb); nwb org
kailinzhuang Apr 11, 2026
1e4f056
return both mic_trial and mic_copy
kailinzhuang Apr 14, 2026
d3eea5f
place holder for mic_copy
kailinzhuang Apr 14, 2026
0ce5e4e
autoreload
kailinzhuang Apr 14, 2026
51bb86a
change dtype from np complex_ to complex128
kailinzhuang Apr 21, 2026
ddfdec9
update dtype from np float_ to float64
kailinzhuang Apr 21, 2026
c5911ab
refactor to use .item() for np array conversion in auto-correlation a…
kailinzhuang Apr 21, 2026
a600d8c
refactor to use .item() for np array in print
kailinzhuang Apr 21, 2026
707b617
include tqdm progress bar
kailinzhuang Apr 22, 2026
978abed
store original mps and zero mean mps separately
kailinzhuang Apr 22, 2026
86590d8
add fit_seg_st structure for single trial model
kailinzhuang Apr 22, 2026
ba43af0
save numbers and print
kailinzhuang Apr 22, 2026
3041ed0
cv
kailinzhuang Apr 22, 2026
02e0423
feature dimensionality, for 'kernel'
kailinzhuang Apr 22, 2026
01bed76
format
kailinzhuang Apr 22, 2026
80b7f97
add progress bar
kailinzhuang Apr 22, 2026
6ea0507
first pass implemented for 'Kernel'
kailinzhuang Apr 23, 2026
647eeba
implement other kenels first pass
kailinzhuang Apr 27, 2026
d3c4d74
derivative threshold options
kailinzhuang Apr 27, 2026
b395a85
fix: store error in response for segmented fitting
kailinzhuang Apr 28, 2026
cf66200
fix avg
kailinzhuang May 5, 2026
530240a
add raw_ampdev
kailinzhuang May 5, 2026
69f067a
test spectrogram threshold
kailinzhuang May 6, 2026
2f3254b
add notebook xcorr of mic vs stored stim amplitde
kailinzhuang May 9, 2026
f01b01d
add option to use stimulus or audio efferent copy
kailinzhuang May 15, 2026
13bf6b5
add threshold spectrogram option in preprocess_sound_nwb to be consis…
kailinzhuang May 15, 2026
7fa2c14
add snrEst arg for calculation
kailinzhuang May 15, 2026
c72e3ef
rm
kailinzhuang May 18, 2026
6259c22
format
kailinzhuang May 18, 2026
c427b01
stimulus sampling rate by stim_type
kailinzhuang May 18, 2026
bddbdae
typo
kailinzhuang May 18, 2026
f06495e
format
kailinzhuang May 18, 2026
a0b605f
refactor preprocess_sound_nwb to use groups for 'trial-averaged' grou…
kailinzhuang May 18, 2026
c33a921
add option for 'mic' stim_type in _generate_srdata function
kailinzhuang May 18, 2026
ae30f56
add mode parameter to preprocess_sound_nwb for handling average and s…
kailinzhuang May 18, 2026
3559794
fix: correct noise variance from snr calculation in fit_seg function
kailinzhuang May 20, 2026
854bb8b
fix: update response variance calculation in fit_seg to use the corre…
kailinzhuang May 20, 2026
beca48b
fix: use original thresholding of shifting by max_stim_amp and dbnois…
kailinzhuang May 21, 2026
b3552b3
remove unused original_spec in generate_srData_nwb_single_trials
kailinzhuang May 21, 2026
54a186d
fix
kailinzhuang May 21, 2026
31d519a
feat: add compute_amp_dev_threshold function for different options in…
kailinzhuang May 21, 2026
5c8c1dc
update preprocess_srData docstring
kailinzhuang May 21, 2026
6eb1473
add r2_comparison notebook to compare seg+id models fit on efferent c…
kailinzhuang May 22, 2026
ee72445
Merge remote-tracking branch 'kailinzhuang' into mic
kailinzhuang May 22, 2026
1ae35b0
resolve merge conflict in fit_seg function
kailinzhuang May 22, 2026
f9ab0eb
print
kailinzhuang May 27, 2026
21ad916
set derivative threshold option to default if none
kailinzhuang May 27, 2026
75093a3
Merge branch 'theunissenlab:main' into mic
kailinzhuang May 27, 2026
c717dc5
Merge branch 'main' of github.com:kailinzhuang/strfPy into mic
kailinzhuang Jun 8, 2026
6f4fa6a
fix inverse svd as in fit_seg
kailinzhuang Jun 10, 2026
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