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thomazbastiaanssen/README.md

Thomaz F. S. Bastiaanssen, PhD

  • 👋 Hi, I’m @thomazbastiaanssen

  • 🦠 I am a bioinformatician interested in the role of host-microbial co-metabolism in mental health.

  • 🏥 I work at the Amsterdam University Medical Centres:

  • 🪪 Visit my website to learn more about my research.

Bioinformatics resources:

Guidebook review for host-microbiome bioinformatics analysis

Published in Nature: Mental Health in two parts: part 1, part 2.
Pre-prints with original figures freely available: part 1, part 2.
The annotated supplementary tutorial in R also be found here.

Multi-modal INtegration Operations, Tools and AUxilaries in R: MinotauR

package description
🗃️ MultiFactor S7 classes for relational data
🧶 ariadne Import and wrangle relational data
🕷️ anansi Analysis of specific feature-pair interactions
🦉 pallas Compose and send SPARQL queries from R
⛵ argonaut Tools for stratified analysis

Longitudinal data analysis

package description
🌀 volatility Compute microbial instability over time
⏳ kronos Estimate and compare circadian rhythmicity

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