pg-tree

Command-line tools for printing PG tags from SAM/BAM/CRAM files

Supports

Usage

$ pg-tree /path/to/file.bam
bwa  (v0.7.17)
├── samtools  (v1.19)
│   └── picard  (v3.1.0)
└── another-tool

Development

Install in a virtual environment:

python3 -m venv .venv
. .venv/bin/activate
pip install -e .[dev]

Testing:

pytest tests/ -v

Linting:

ruff check src/