vcf-compare

Helper functions for plotting comparisons of VCF files.

For examples in a Jupyter notebook see: example.

Plots implemented

• 2-way Venn diagram of shared and unique variants
• 4-way Venn diagram of shared and unique pass and filtered variants
• Euler diagram of sets of shared and unique pass and filtered variants
• Variant position plots
• Variant metric range plots

TODO

• Info filters used to determine what is considered pass and filtered (vennCompare.py feature)
• Info/filter fields used to determine what is considered shared and unique
• Plot customisation