Distributed behavioral experiments
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Updated
Feb 19, 2025 - Python
Distributed behavioral experiments
A device for measuring licking behaviour in rodents in real time
GUI tool for computing 50% withdrawal thresholds from von Frey up-down data with publication-ready figures and statistical analysis
an ml model to classify behavior in East African cichlid fish
Unity package consuming OpenApparatus.Core to generate procedural navigation environments in Unity scenes.
Review of mathematical neuroscience topics for the UMN Neurosci prelim
Streamlit tool to explore individual mouse behavior—occupancy, zone/pen transitions, circadian activity, food use, and cross-pen roaming—from RFID colony data.
Software MATLAB R2011a para control y registro de la caja conductual CMC/Valentia.
Barnes maze video analysis in the browser: classical CV tracking, hole investigations and escape entries, latency/error/path/strategy metrics, hand corrections that propagate, and CSV/XLSX export stamped with every parameter and the tool version. No install, no GPU, no upload.
Object-oriented, extensible behavioral testing framework for Odor Discrimination and multi-modal experiments. Features real-time Teensy/MATLAB integration and automated data logging.
A no-code Windows GUI application for recording timestamped MP4 videos from Basler USB3 cameras using the pylon SDK. Built for behavioral neuroscience recordings (such as LUPE (PMID: 41501467)), with live preview, adjustable camera settings, and automatic JSON metadata output.
Desktop app that turns OptoDrum visual acuity / contrast sensitivity staircase exports into one clean, analysis-ready CSV report (one row per animal).
Cross-platform desktop app (Avalonia) for authoring and previewing OpenApparatus floor plans.
Arduino firmware for Drosophila peak-end-rule electroshock-conditioning experiments. PARROTard protocol; Python host via cuewire.
Engine-agnostic .NET library for procedurally generating reproducible navigation environments — multi-room floor plans, mazes, and behavioral-research apparatuses.
A Python toolkit for standardizing the analysis of IntelliCage experiments
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