Repository for bulk RNAseq course of the Danish Health Data Science Sandbox project.

A complete workflow for analyzing and visualizing bulk RNA-seq data.

RNA-seq Quality Control and Preprocessing Tool - Interactive Shiny application for comprehensive RNA sequencing data validation, quality assessment, filtering, and normalization. Developed at Harvard Medical School Department of Immunology for global research use. Topics

Bulk-RNA seq workflow

Study of pulmonary immune response to Toxoplasma gondii infection through bulk RNA-seq data analysis using data set GSE119855

Bioinfo scripts for the analyses described in EXPERIMENTAL PROCEDURES section of "Structured wound angiogenesis instructs mesenchymal barrier compartments in the regenerating nerve" manuscript

Analysis of Bulk RNA Sequencing of Colon(LMMP) and DRG tissues of IBS mice.

Code used for the deconvoluting right atrium and sinus node bulk RNA-Seq into scRNA-Seq

bisque-deconv is a fully containerized and reproducible workflow for cell-type deconvolution of bulk RNA-seq data using BisqueRNA. It provides quality control, signature matrix generation, tumor microenvironment (TME) interpretation tools, and ready-to-publish reports.

Tabula Muris Senis Transcriptomic Secretome Database Generation + White Adipose Depot Analysis

Code for the MiSTR microfluidic stem cell atlas study of early human neural patterning.