computational-neuroimaging

Connectome-based Hopfiled Neural Networks (fcHNN)

Data from our own pre-processing of the ABIDE I sMRI dataset (1035 subjects) in FreeSurfer v6.

Early detection of Alzheimer’s Disease using 3D CNNs on structural MRIs, leveraging the ADNI dataset, Clinica preprocessing, and MeluXina HPC for high-performance training and Grad-CAM interpretability. 🧠

fMRI design optimization for complex experimental settings. Primary work: Atharv A. Umap and Valentin Guigon; Supervision: Valentin Guigon

Tutorial covering group DCM analyses of fMRI and M/EEG

Super-resolution of 3D electron microscopy images using deep learning, enabling high-quality reconstruction of large-scale 3D EM volumes across large brain fields of view.

"EEG-to-brain voxelization using hybrid information-theoretic methods (work in progress)"

Eigenvalue geometric features for cortical surface morphology analysis.

Advanced Multi-Omics Modeling for Elucidating Neuronal Architecture

This repository contains some codes for the computational neuroscience.

Fitting cable models (SWC) to 3D surface mesh and skeleton data