Processing the DisGeNET database of disease–gene association
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Mar 26, 2016 - Jupyter Notebook
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disgenet
Here are 6 public repositories matching this topic...
A comprehensive bioinformatics pipeline for downloading and analyzing genes associated with specific phenotypes from multiple biological databases. This package provides both R scripts for gene retrieval and Python analysis tools for downstream analysis.
bioinformatics r genomics computational-biology gtex phenotypes uniprot opentargets kegg reactome disgenet disease-gene-association hpo omim gene-prioritization literature-mining string-db phenotype-to-gene
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Apr 28, 2026 - Python
EDA of different databases to extract IBD-relevant genes, their coverage in a 10X Genomics spatial transcriptomics panel and the main cell types and tissues related to these genes.
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Feb 15, 2025 - Jupyter Notebook
A report giving a concise overview of Neo4J database using python and exploiting data from the DisGeNet repository
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Jul 9, 2020 - Jupyter Notebook
Grouped compounds together w/ k-means clustering then displayed it using R-Shiny front end. The criteria for comparison are h-bond donators, h-bond acceptors, and rotational bonds. Compound.csv is made w/ 1000 random chemicals from disgenet.org
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Dec 26, 2021 - R
Python Clinical Variant Tools This repository hosts Python scripts designed to streamline the retrieval of clinical variant information from authoritative sources such as ClinVar and DisGeNET. These tools facilitate efficient data extraction and analysis for researchers and professionals in the field of genetics and genomics.
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Jun 3, 2024 - Python
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