eDNA metabarcoding pipeline

An open-source data management system for tracking environmental DNA samples and metadata

R package for fitting Bayesian multiscale occupancy models

This repository contains scripts and data for training and utilizing machine learning classifiers to predict qPCR cross-amplification.

Scripts for executing a filtering, clustering and identification pipeline for eDNA samples.

Comparison between eDNA and trawling for fish biodiversity metrics

Calculate optimal combination of eDNA barcodes based on amplicon sequences

Tool repositiory for bam files

Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape

A web tool for optimally choosing eDNA primer pairs to identify a set of taxa.

Taxonomic classification of DNA sequences using BLAST or vsearch with configurable identity thresholds and batch processing

Burrow-Wheeler Aligner for short-read alignment (optimized for aeDNA)