Open-source digital twin for fluorescence imaging systems, including image-dataset analysis, optical filters, illumination, sensors, electronics, calibration, and hardware optimization.

A set of tools to simulate expansion microscopy expriments under different labeling and imaging conditions. Python 3 port, updated from Python 2.

Proposal-to-biomass microscopy pipeline for DAPI-like fluorescence images using high-recall proposal segmentation, crop annotation, local contour refinement, and contour-based biovolume estimation.