Lightweight Python utility for calculating Solvent Accessible Surface Area (SASA) and pLDDT confidence metrics for AlphaFold2 protein binding pockets.
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Aug 8, 2026 - Python
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plddt
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Agent skill and pipeline to retrieve, analyze, and visualize AlphaFold predicted structures with interactive 3D WebGL, pLDDT metrics, and PAE domain heatmaps in Canvas.
python webgl bioinformatics structural-biology protein-structure computational-biology gemini uniprot ai-agents protein-folding molecular-visualization alphafold canvas-ui agent-skill 3dmoljs intrinsic-disorder plddt alphafold-database predicted-aligned-error domain-boundary-detection
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Aug 25, 2026 - Python
AlphaFold and PDB confidence and geometry quality gate. Fixed the clash detector flagging every normal peptide bond as a false steric clash on real full-atom structures (the demo's CA-only fixture never exposed it).
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Aug 5, 2026 - Python
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