Scripts for the SH-SY5Y pharmacogenome (PacBio HiFi WGS, Kuban et al., The Pharmacogenomics Journal): promoter methylation from 5mC signal, chromosome-level copy number, 1000G ancestry projection and Clair3 caller validation. Raw data SRA SRX34088211; expression datasets GEO GDS1548, GDS2125, GDS3750, GDS5281.
bioinformatics dna-methylation pharmacogenomics long-read-sequencing pacbio-hifi-sequencing-reads cyp450 sh-sy5y
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Aug 11, 2026 - Jupyter Notebook