Open-source volumetric brain vasculature dataset — 12 two-photon microscopy stacks with dense voxel-level segmentation labels

Volumetric vessel segmentation with convolutional networks (Teikari et al., 2016, arXiv:1606.02382). ZNN framework, 3D architecture

MATLAB analysis pipeline for two-photon microscopy vasculature — vessel tracing, diameter measurement, and 3D visualization

This repository contains the code for Neural fields for Adaptive Optical Two-photon Fluorescence Microscopy (NeAT).

Spectral separability analysis for two-photon fluorescence microscopy — fluorophore selection optimization via genetic algorithms

Model-agnostic biomedical segmentation MLOps platform extending the MONAI ecosystem. Preclinical vascular imaging with Docker-per-flow isolation, SkyPilot intercloud compute, and Spec-driven development (?). Companion code to the VASCADIA manuscript.