mehari-data

Reproducible data builds for mehari.

This repository contains a snakemake workflow to build mehari transcript databases based on SACGF/cdot.

Resulting Files

Databases are built for each combination of genome release (GRCh37, GRCh38) and reference source (ensembl, refseq):

• mehari-data v0.9.0
  • uses:
    • mehari v0.30.1
    • cdot: v0.2.27
  • GRCh37-refseq
    • genome release: GRCh37.p13
    • VEP/ENSEMBL equivalent: 105
    • RefSeq assembly: GCF_000001405.25
    • resulting transcript database: mehari-0.26.1.GRCh37-refseq.txs.bin.zst
  • GRCh37-ensembl
    • genome release: GRCh37.p13
    • VEP/ENSEMBL release: 105
    • RefSeq equivalent: GCF_000001405.25
    • resulting transcript database: mehari-0.26.1.GRCh37-ensembl.txs.bin.zst
  • GRCh38-refseq
    • genome release: GRCh38.p13
    • VEP/ENSEMBL equivalent: 112
    • RefSeq assembly: GCF_000001405.39
    • resulting transcript database: mehari-0.26.1.GRCh38-refseq.txs.bin.zst
  • GRCh38-ensembl
    • genome release: GRCh38.p13
    • VEP/ENSEMBL release: 112
    • RefSeq equivalent: GCF_000001405.39
    • resulting transcript database: mehari-0.26.1.GRCh38-ensembl.txs.bin.zst

New builds of mehari-data will be considered when

• a new mehari version is released, OR
• a new cdot version is released, OR
• bugs are found and make a new release necessary.

Generally, only the data for the latest mehari protobuf schema is created.