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Support multiscale images #56

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Merged
keller-mark merged 1 commit into from
Nov 21, 2025
Merged

Support multiscale images #56

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6 changes: 5 additions & 1 deletion src/easy_vitessce/spatialdata_plot.py
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Original file line number Diff line number Diff line change
Expand Up @@ -341,7 +341,11 @@ def render_images(
# RGB vs. non-RGB logic in spatialdata-plot:
# Reference: https://github.com/scverse/spatialdata-plot/blob/010560f7eebdd245693a8c55eede0f895a636f5c/src/spatialdata_plot/pl/render.py#L865
img = self.sdata.images[element]
all_channels = img.coords["c"].values.tolist()
try:
all_channels = img.coords["c"].values.tolist()
except KeyError:
# TODO: use a better way than try/except of determining whether this is a multi-resolution image.
all_channels = img.scale0.coords["c"].values.tolist()
img_dtype = img.dtype
img_dtype_is_uint8 = img_dtype.kind == 'u' and img_dtype.itemsize == 1

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