wsi_project

Download Pretrained Checkpoint

The pretrained SimCLR checkpoint file for TCGA-BRCA (ResNet-50 backbone) is available via Google Drive:

https://drive.google.com/file/d/1-nOIL4GUlL8dt-Tcq-YjE8rA_Q2Qsl4E/view?usp=sharing

Name		Name	Last commit message	Last commit date
Latest commit History 43 Commits
.ipynb_checkpoints		.ipynb_checkpoints
augmentations		augmentations
checkpoints/simclr_bracs/simclr		checkpoints/simclr_bracs/simclr
configs		configs
lightning_logs		lightning_logs
logs		logs
BRACSCHECK.py		BRACSCHECK.py
BRACS_Downsample.py		BRACS_Downsample.py
BRACS_Downsample.sh		BRACS_Downsample.sh
BRACS_PATCH.py		BRACS_PATCH.py
README.md		README.md
TCGA-BRCA-Norm.sh		TCGA-BRCA-Norm.sh
TCGA-BRCA-PATCH.sh		TCGA-BRCA-PATCH.sh
TCGA_BRCA_Downsample.py		TCGA_BRCA_Downsample.py
TCGA_BRCA_Downsample.sh		TCGA_BRCA_Downsample.sh
badpatch.py		badpatch.py
bracs_extractor.sh		bracs_extractor.sh
bracs_norm.py		bracs_norm.py
bracs_norm.sh		bracs_norm.sh
bracs_norm_58025766.err		bracs_norm_58025766.err
bracs_norm_58025766.out		bracs_norm_58025766.out
bracs_simclr.yaml		bracs_simclr.yaml
bracsresize.py		bracsresize.py
check_ckpt.py		check_ckpt.py
clam_tcga_brca.py		clam_tcga_brca.py
color_norm.py		color_norm.py
count_bracs_pngs		count_bracs_pngs
count_bracs_pngs.py		count_bracs_pngs.py
downsample_58002052.err		downsample_58002052.err
downsample_58002052.out		downsample_58002052.out
downsample_58002617.err		downsample_58002617.err
downsample_58002617.out		downsample_58002617.out
downsample_58033306.err		downsample_58033306.err
downsample_58033306.out		downsample_58033306.out
encoder_resnet50_simclr.pth		encoder_resnet50_simclr.pth
epoch_check.py		epoch_check.py
extract_feature_resnet.py		extract_feature_resnet.py
extract_feature_resnet.sh		extract_feature_resnet.sh
extract_feature_simclr.py		extract_feature_simclr.py
extract_feature_simclr.sh		extract_feature_simclr.sh
extract_feature_vig.py		extract_feature_vig.py
extract_feature_vig.sh		extract_feature_vig.sh
extract_feature_vit.py		extract_feature_vit.py
extract_feature_vit.sh		extract_feature_vit.sh
overlap_rate.py		overlap_rate.py
private.yaml		private.yaml
pt_test.py		pt_test.py
store_bracs_extractor.py		store_bracs_extractor.py
tcga_brca_metadata.py		tcga_brca_metadata.py
test.ipynb		test.ipynb
test.py		test.py
test2.py		test2.py
test3.py		test3.py
train_flattened.py		train_flattened.py

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