BL-HiChIP

This pipeline has been deprecated as of August 2021. Please update your pipelines to the official nextflow pipeline at https://github.com/wbszhu/HiTag.

We recommend transitioning to the nextflow version since it easier to install.

python3 format.py AH-1.BL-hichip.sh

nohup bash AH-1.BL-hichip.sh  > AH-1 2>&1&

Name		Name	Last commit message	Last commit date
Latest commit History 20 Commits
00.config		00.config
test/00.data/AH-1		test/00.data/AH-1
.gitignore		.gitignore
00.BL-hichip.sh		00.BL-hichip.sh
BL-hichip.sh		BL-hichip.sh
LICENSE		LICENSE
README.md		README.md
bwa-pairtools.sh		bwa-pairtools.sh
example_run.sh		example_run.sh
format.py		format.py
format_fithichip_config.py		format_fithichip_config.py
format_hicpro_config.py		format_hicpro_config.py
key_words.txt		key_words.txt
states.py		states.py