[codex] audit and upgrade packages

[ya-nsh]

Summary

• upgrade the Bun toolchain pin and refresh root dev tooling within stable majors
• bump @modelcontextprotocol/sdk and @opentui/core to current releases
• add targeted dependency overrides so bun audit resolves vulnerable transitive packages

Validation

• npm exec --yes --package=bun@1.3.14 -- bun audit
• npm exec --yes --package=bun@1.3.14 -- bun run check
• npm exec --yes --package=bun@1.3.14 -- bun run build
• npm exec --yes --package=bun@1.3.14 -- bun run test

Notes

• Turbo 2.9.14 still warns that it cannot parse bun.lock because this repo tracks bun.lockb; builds/tests continue successfully.
• bun run lint is not used as a gate here because it reports existing unused-symbol errors across unrelated source files.

[coderabbitai]

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✨ Finishing Touches

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch codex/package-audit-upgrades

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