GitHub - yeminlan/POGO_update: POGO_v1 updated to POGO_v2

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 8 Commits
POGO_update_main.sh		POGO_update_main.sh
affinegapmex.mexa64		affinegapmex.mexa64
align_16S.m		align_16S.m
align_markergene.m		align_markergene.m
blast_against_ref_markergene.sh		blast_against_ref_markergene.sh
blast_job_template.script		blast_job_template.script
blast_ref_markergene.sh		blast_ref_markergene.sh
build_blastdb.sh		build_blastdb.sh
extract.py		extract.py
extract_taxonomy.py		extract_taxonomy.py
generate_POGO_files.m		generate_POGO_files.m
get_16S_and_CDS.sh		get_16S_and_CDS.sh
get_genbank_list.sh		get_genbank_list.sh
get_genome_pairs.m		get_genome_pairs.m
get_new_genome_fasta.sh		get_new_genome_fasta.sh
get_new_genome_gbks.sh		get_new_genome_gbks.sh
get_new_genome_names.m		get_new_genome_names.m
get_taxonomy.m		get_taxonomy.m
merge_databases.m		merge_databases.m
myaa2int.m		myaa2int.m
myblastreadlocal.m		myblastreadlocal.m
mydna2rna.m		mydna2rna.m
myfastaread.m		myfastaread.m
mygenbankread.m		mygenbankread.m
myint2nt.m		myint2nt.m
mynt2int.m		mynt2int.m
mynwalign.m		mynwalign.m
myseqcomplement.m		myseqcomplement.m
myseqrcomplement.m		myseqrcomplement.m
myseqreverse.m		myseqreverse.m
myswalign.m		myswalign.m
ncbi2014.mat		ncbi2014.mat
parallel_align.m		parallel_align.m
parse2_ref_markergene.m		parse2_ref_markergene.m
parse_ref_markergene.m		parse_ref_markergene.m
realign_besthits.m		realign_besthits.m
realign_job_template.script		realign_job_template.script
realign_summary.m		realign_summary.m
ref_markergene.fasta		ref_markergene.fasta
ref_markergene.nhr		ref_markergene.nhr
ref_markergene.nin		ref_markergene.nin
ref_markergene.nog		ref_markergene.nog
ref_markergene.nsd		ref_markergene.nsd
ref_markergene.nsi		ref_markergene.nsi
ref_markergene.nsq		ref_markergene.nsq
simplegapmex.mexa64		simplegapmex.mexa64