I'm a research software engineer, genome biologist, and educator who helps researchers of all levels improve their computer science and data science skills.
- Adamtaranto/teloclip - A tool for the recovery of unassembled telomeres from soft-clipped read alignments. (today)
- bioconda/bioconda-recipes - Conda recipes for the bioconda channel. (today)
- Adamtaranto/deRIP2 - Reconstruct ancestral state sequences of fungal repeat families by correcting for RIP-like mutations. Mask RIP or deamination events from alignments. (2 days ago)
- WEHI-Education/Workshop-IntroToHPC-Slurm - RCP Training introducing HPC concepts and SLURM (3 days ago)
- Adamtaranto/rusty-dot - A Python library for making fast dot-plot comparisons of DNA sequences powered by Rust FM-Index (4 days ago)
- Adamtaranto/teloclip (v0.4.0, today) - A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
- Adamtaranto/deRIP2 (v0.5.1, 1 week ago) - Reconstruct ancestral state sequences of fungal repeat families by correcting for RIP-like mutations. Mask RIP or deamination events from alignments.
- tseemann/mlst (v2.35.0, 1 month ago) - 🆔 Scan contig files against PubMLST typing schemes
- Adamtaranto/TIRmite (v1.4.0, 3 months ago) - Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.
- dalofa/telomore (v0.4.1, 5 months ago) - A tool for extending linear bacterial (primarily actinomycete) replicons to capture the telomere