Adam Taranto

I'm a research software engineer, genome biologist, and educator who helps researchers of all levels improve their computer science and data science skills.

👩‍💻 What I'm currently working on

• Adamtaranto/TIRmite - Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features. (today)
• Adamtaranto/teloclip - A tool for the recovery of unassembled telomeres from soft-clipped read alignments. (1 day ago)
• bioconda/bioconda-recipes - Conda recipes for the bioconda channel. (1 day ago)
• Adamtaranto/deRIP2 - Reconstruct ancestral state sequences of fungal repeat families by correcting for RIP-like mutations. Mask RIP or deamination events from alignments. (3 days ago)
• WEHI-Education/Workshop-IntroToHPC-Slurm - RCP Training introducing HPC concepts and SLURM (4 days ago)

🔭 Latest releases I've contributed to

• Adamtaranto/TIRmite (v1.5.0, today) - Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.
• Adamtaranto/teloclip (v0.4.0, 1 day ago) - A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
• Adamtaranto/deRIP2 (v0.5.1, 1 week ago) - Reconstruct ancestral state sequences of fungal repeat families by correcting for RIP-like mutations. Mask RIP or deamination events from alignments.
• tseemann/mlst (v2.35.0, 1 month ago) - 🆔 Scan contig files against PubMLST typing schemes
• dalofa/telomore (v0.4.1, 5 months ago) - A tool for extending linear bacterial (primarily actinomycete) replicons to capture the telomere