Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Search
/
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
AllTheBacteria
atb-cli
Repository navigation
Code
Issues
4
(4)
Pull requests
Actions
Projects
Security and quality
Insights
More
items
Actions: AllTheBacteria/atb-cli
Actions
All workflows
Workflows
CI
CI
docs
docs
pages
pages
Release
Release
Show more workflows...
Management
Caches
Deployments
CI
CI
Actions
Loading...
Loading
Sorry, something went wrong.
Uh oh!
There was an error while loading.
Please reload this page
.
will be ignored since log searching is not yet available
Show workflow options
Create status badge
Create status badge
Loading
Uh oh!
There was an error while loading.
Please reload this page
.
ci.yml
will be ignored since log searching is not yet available
88 workflow runs
88 workflow runs
Event
Filter by Event
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching events.
Status
Filter by Status
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching statuses.
Branch
Filter by Branch
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching branches.
Actor
Filter by Actor
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching users.
docs(changelog): stamp v0.22.1
CI
#88:
Commit
cce6a82
pushed by
thanhleviet
4m 11s
main
main
4m 11s
View workflow file
fix(amr): apply GTDB species matching on the SQLite index path (#50)
CI
#87:
Commit
434089b
pushed by
thanhleviet
4m 7s
main
main
4m 7s
View workflow file
fix(amr): apply GTDB species matching on the SQLite index path
CI
#86:
Pull request
#50
opened by
thanhleviet
4m 19s
fix/amr-index-gtdb-species
fix/amr-index-gtdb-species
4m 19s
View #50
View workflow file
docs(guides): note GTDB-aware --species and --genus matching
CI
#85:
Commit
c82795f
pushed by
thanhleviet
4m 7s
main
main
4m 7s
View workflow file
docs(changelog): stamp v0.22.0
CI
#84:
Commit
2205c93
pushed by
thanhleviet
4m 55s
main
main
4m 55s
View workflow file
feat(query): match GTDB taxonomy for --species and --genus (#48)
CI
#83:
Commit
9a60dac
pushed by
thanhleviet
4m 57s
main
main
4m 57s
View workflow file
feat(query): match GTDB taxonomy for --species and --genus
CI
#82:
Pull request
#48
opened by
thanhleviet
5m 7s
feat/gtdb-species-normalize
feat/gtdb-species-normalize
5m 7s
View #48
View workflow file
Merge pull request #46 from AllTheBacteria/chore/gofmt-drift
CI
#81:
Commit
b003b49
pushed by
thanhleviet
3m 57s
main
main
3m 57s
View workflow file
style: fix gofmt drift and gate formatting in CI
CI
#80:
Pull request
#46
opened by
thanhleviet
3m 54s
chore/gofmt-drift
chore/gofmt-drift
3m 54s
View #46
View workflow file
Merge pull request #45 from AllTheBacteria/fix/keep-unknown-command-hint
CI
#79:
Commit
4c77c14
pushed by
thanhleviet
4m 17s
main
main
4m 17s
View workflow file
fix(cli): keep the --help hint on an unknown command
CI
#78:
Pull request
#45
opened by
thanhleviet
3m 55s
fix/keep-unknown-command-hint
fix/keep-unknown-command-hint
3m 55s
View #45
View workflow file
docs(changelog): stamp v0.21.1
CI
#77:
Commit
27aa518
pushed by
thanhleviet
4m 6s
main
main
4m 6s
View workflow file
Merge pull request #44 from AllTheBacteria/fix/double-error-print
CI
#76:
Commit
82b2fbb
pushed by
thanhleviet
4m 50s
main
main
4m 50s
View workflow file
fix(cli): print each error once
CI
#75:
Pull request
#44
opened by
thanhleviet
3m 54s
fix/double-error-print
fix/double-error-print
3m 54s
View #44
View workflow file
docs(changelog): stamp v0.21.0
CI
#74:
Commit
36eba8c
pushed by
thanhleviet
4m 5s
main
main
4m 5s
View workflow file
Merge pull request #43 from AllTheBacteria/feat/query-by-run-accession
CI
#73:
Commit
97969e8
pushed by
thanhleviet
3m 54s
main
main
3m 54s
View workflow file
feat(query): filter by sequencing run accession; fix NA reaching download --from
CI
#72:
Pull request
#43
opened by
thanhleviet
3m 48s
feat/query-by-run-accession
feat/query-by-run-accession
3m 48s
View #43
View workflow file
docs(changelog): stamp v0.20.0
CI
#71:
Commit
d01b741
pushed by
thanhleviet
4m 32s
main
main
4m 32s
View workflow file
Merge pull request #42 from AllTheBacteria/feat/columns-command
CI
#70:
Commit
064bd79
pushed by
thanhleviet
3m 59s
main
main
3m 59s
View workflow file
feat(query): add atb columns and validate --columns names
CI
#69:
Pull request
#42
opened by
thanhleviet
4m 20s
feat/columns-command
feat/columns-command
4m 20s
View #42
View workflow file
docs(changelog): stamp v0.19.0
CI
#68:
Commit
ed37bda
pushed by
thanhleviet
3m 50s
main
main
3m 50s
View workflow file
feat(amr): add --species-like wildcard filter (#41)
CI
#67:
Commit
7963bfe
pushed by
thanhleviet
3m 48s
main
main
3m 48s
View workflow file
feat(amr): add --species-like wildcard filter
CI
#66:
Pull request
#41
opened by
thanhleviet
3m 31s
feat/amr-species-like
feat/amr-species-like
3m 31s
View #41
View workflow file
Merge pull request #40 from AllTheBacteria/feat/agc-balanced-migration
CI
#65:
Commit
5d8d14d
pushed by
thanhleviet
3m 27s
main
main
3m 27s
View workflow file
docs(agc): align design docs with shipped v0.18.1
CI
#64:
Pull request
#40
opened by
thanhleviet
3m 33s
feat/agc-balanced-migration
feat/agc-balanced-migration
3m 33s
View #40
View workflow file
Previous
1
2
3
4
Next
You can’t perform that action at this time.