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Add functions for generating species codes and managing parquet datasets #27

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Merged
AbhirupaGhosh merged 7 commits into from
Jul 31, 2026
Merged

Add functions for generating species codes and managing parquet datasets #27

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00ff195
Add functions for generating species codes and managing parquet datasets
AbhirupaGhosh Jul 22, 2026
e1aa5dd
Update generate_matrices_ml.R
AbhirupaGhosh Jul 28, 2026
eb4833b
Refactor generateMLInputs function to use parquet directory instead o…
AbhirupaGhosh Jul 28, 2026
edcf43a
Add relevant example data for testing generateMLInputs() and remove e…
AbhirupaGhosh Jul 28, 2026
964f0b8
Add Shigella sonnei example data
AbhirupaGhosh Jul 29, 2026
db4c105
Update metadata.parquet after https://github.com/JRaviLab/amRdata/pul…
AbhirupaGhosh Jul 30, 2026
a923cdf
Merge remote-tracking branch 'origin/main' into Update_matrix_generation
amcim Jul 31, 2026
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497 changes: 308 additions & 189 deletions R/generate_matrices_ml.R
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