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Fix variant id harmonization and NA handling in summary stats and LD - #413

Merged

danielnachun merged 10 commits into

StatFunGen:mainfrom

Nov 6, 2025

Commits on Oct 2, 2025

clean NAs before mutated in alelle_qc
kal26
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00f2058
clean build from LD varaint ids
kal26
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756b657
add missing defualt for pip_cutoff_to_skip_ld
kal26
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308487e
chr anming for LD columns
kal26
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77630df
chr naming for LD columns
kal26
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50e8dcb
chr and build naming in LD variant ids
kal26
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84e2e51
harmonize LD block variants, handel nas in printing
kal26
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089383f
harmonize all to have chr prefix
kal26
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1b90a95
remove nas from sumstats
kal26
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51ba8e8
Update documentation
kal26
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138052f