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Enable extraction of gene networks with opposite phenotypic effects

request💡New feature or requestNew feature or request

Status: Open.

#169 In akikuno/TSUMUGI-dev;

· akikuno opened on May 3, 2026

Add a toggle to show or hide module borders in visualizations

request💡New feature or requestNew feature or request

Status: Open.

#168 In akikuno/TSUMUGI-dev;

· akikuno opened on Apr 2, 2026

Add a slider to filter modules by node count in the web visualization

request💡New feature or requestNew feature or request

Status: Open.

#167 In akikuno/TSUMUGI-dev;

· akikuno opened on Apr 2, 2026

Update TSUMUGI to use IMPC Data Release Version 24

request💡New feature or requestNew feature or request

Status: Open.

#166 In akikuno/TSUMUGI-dev;

· akikuno opened on Mar 24, 2026

Handle missing IMPC effect_size values as NaN instead of 0 in TSUMUGI records

bug🐛BugBug

request💡New feature or requestNew feature or request

Status: Open.

#165 In akikuno/TSUMUGI-dev;

· akikuno opened on Mar 24, 2026

Update graphml_builder to use effect size for node phenotypes and clarify edge annotation

command-line⌘command-line toolscommand-line tools

request💡New feature or requestNew feature or request

Status: Open.

#164 In akikuno/TSUMUGI-dev;

· akikuno opened on Mar 19, 2026

Profile and optimize slow GraphML export in tsumugi build-graphml

command-line⌘command-line toolscommand-line tools

request💡New feature or requestNew feature or request

Status: Open.

#163 In akikuno/TSUMUGI-dev;

· akikuno opened on Feb 25, 2026

tsumugi -mp の 複数 MP term の受付対応

command-line⌘command-line toolscommand-line tools

request💡New feature or requestNew feature or request

Status: Open.

#162 In akikuno/TSUMUGI-dev;

· kinari-labwork opened on Feb 19, 2026

Missing alert when submitting more than 200 genes in Gene List results in empty network page

bug🐛BugBug

web🎨Web app and its user interfaceWeb app and its user interface

Status: Open.

#161 In akikuno/TSUMUGI-dev;

· akikuno opened on Feb 10, 2026

Does Phenotypic Effect Size Reflect Upstream–Downstream Gene Hierarchy?

project🎯A matter that concerns the core of the projectA matter that concerns the core of the project

question❓Further information is requestedFurther information is requested

Status: Open.

#159 In akikuno/TSUMUGI-dev;

· akikuno opened on Feb 4, 2026

Highlightのカテゴリが重複する場合の可視化

request💡New feature or requestNew feature or request

web🎨Web app and its user interfaceWeb app and its user interface

Status: Open.

#158 In akikuno/TSUMUGI-dev;

· aki2274 opened on Feb 4, 2026

Add centrality calculation to the command-line interface

command-line⌘command-line toolscommand-line tools

request💡New feature or requestNew feature or request

Status: Open.

#131 In akikuno/TSUMUGI-dev;

· akikuno opened on Dec 4, 2025