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Merged
hatjek merged 1 commit into from
Jun 23, 2026
Merged

"harmonized malignant annotation, removed children" #388

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6 changes: 0 additions & 6 deletions besca/datasets/nomenclature/CellTypes_v1.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -267,7 +267,6 @@ exhausted-like CD4-positive, alpha-beta T cell DB:0000002 ExhCD4Tcell 5 CD4-pos
proliferating CD8-positive, alpha-beta T cell DB:0000003 ProlifCD8Tcell 5 CD8-positive, alpha-beta T cell CL:0000625 T cell CL:0000084 lymphocyte CL:0000542 hematopoietic cell CL:0000988 cell CL:0000548
CCR7-positive myeloid dendritic cell DB:0000004 cDC_CCR7 4 myeloid dendritic cell CL:0000782 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 cell CL:0000548
exhausted-like CD8-positive, alpha-beta T cell DB:0000005 ExhCD8Tcell 5 CD8-positive, alpha-beta T cell CL:0000625 T cell CL:0000084 lymphocyte CL:0000542 hematopoietic cell CL:0000988 cell CL:0000548
melanocytic melanoma cell DB:0000006 MelMelanoma 2 malignant cell CL:0001064 neoplastic cell CL:0001063
IL7R-max CD8-positive, alpha-beta cytotoxic T cell DB:0000007 CD8Tcell_IL7Rmax 5 CD8-positive, alpha-beta T cell CL:0000625 T cell CL:0000084 lymphocyte CL:0000542 hematopoietic cell CL:0000988 cell CL:0000548
IL7R-max CD4-positive, alpha-beta cytotoxic T cell DB:0000040 CD4Tcell_IL7Rmax 5 CD4-positive, alpha-beta T cell CL:0000624 T cell CL:0000084 lymphocyte CL:0000542 hematopoietic cell CL:0000988 cell CL:0000548
doublet DB:0000008 Doublet 1 cell CL:0000548
Expand Down Expand Up @@ -316,11 +315,6 @@ IgG plasma cell IgG plasma cell CL:0000985 IgGPlasma 4 plasma cell CL:0000786
IgM or IgA plasma cell DB:0000044 IgMorIgAPlasma 4 plasma cell CL:0000786 lymphocyte of B lineage CL:0000945 hematopoietic cell CL:0000988 cell CL:0000548
IgM plasma cell IgM plasma cell CL:0000986 IgMPlasma 4 plasma cell CL:0000786 lymphocyte of B lineage CL:0000945 hematopoietic cell CL:0000988 cell CL:0000548
naive T cell naive T cell CL:0000898 NaiTcell 4 T cell CL:0000084 lymphocyte CL:0000542 hematopoietic cell CL:0000988 cell CL:0000548
CMS1 colorectal cancer cell DB:0000045 CMS1Colorectal 3 colorectal cancer cell DB:0000049 malignant cell CL:0001064 neoplastic cell CL:0001063
CMS2 colorectal cancer cell DB:0000046 CMS2Colorectal 3 colorectal cancer cell DB:0000049 malignant cell CL:0001064 neoplastic cell CL:0001063
CMS3 colorectal cancer cell DB:0000047 CMS3Colorectal 3 colorectal cancer cell DB:0000049 malignant cell CL:0001064 neoplastic cell CL:0001063
CMS4 colorectal cancer cell DB:0000048 CMS4Colorectal 3 colorectal cancer cell DB:0000049 malignant cell CL:0001064 neoplastic cell CL:0001063
colorectal cancer cell DB:0000049 Colorectal 2 malignant cell CL:0001064 neoplastic cell CL:0001063
enteric glial cell DB:0000050 EntericGlial 3 glial cell CL:0000125 neural cell CL:0002319 cell CL:0000548
endothelial cell of lymphatic vessel endothelial cell of lymphatic vessel CL:0002138 EndothelialLymph 3 endothelial cell of vascular tree CL:0002139 endothelial cell CL:0000115 cell CL:0000548
MSR1-positive macrophage DB:0000056 Macrophage_MSR1 4 macrophage CL:0000235 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 cell CL:0000548
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