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Move malignant signatures from main sigs to Extrasigs - #391

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hatjek merged 1 commit into
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move-malignant-sigs-to-extrasigs
Jun 29, 2026
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Move malignant signatures from main sigs to Extrasigs#391
hatjek merged 1 commit into
mainfrom
move-malignant-sigs-to-extrasigs

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@hatjek hatjek commented Jun 29, 2026

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Reverts the harmonized "Malignant" signature (besca PRs #388/#389) from the main automatic-annotation signatures and restores the separate MelMelanoma and ColorectalCancer signatures as extra (inspect-only) signatures.

  • Remove Malignant entry from CellNames_scseqCMs6_config.tsv and CellNames_scseqCMs6_config.mouse.tsv
  • Remove Malignant signature from CellNames_scseqCMs6_sigs.gmt and CellNames_scseqCMs6_sigs.mouse.gmt
  • Add MelMelanoma and ColorectalCancer signatures to CellNames_scseqCMs6_Extrasigs.gmt and CellNames_scseqCMs6_Extrasigs.mouse.gmt

Reverts the harmonized "Malignant" signature (besca PRs #388/#389) from the
main automatic-annotation signatures and restores the separate MelMelanoma
and ColorectalCancer signatures as extra (inspect-only) signatures.

- Remove Malignant entry from CellNames_scseqCMs6_config.tsv and
  CellNames_scseqCMs6_config.mouse.tsv
- Remove Malignant signature from CellNames_scseqCMs6_sigs.gmt and
  CellNames_scseqCMs6_sigs.mouse.gmt
- Add MelMelanoma and ColorectalCancer signatures to
  CellNames_scseqCMs6_Extrasigs.gmt and CellNames_scseqCMs6_Extrasigs.mouse.gmt

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
@hatjek
hatjek merged commit 75f6653 into main Jun 29, 2026
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@hatjek
hatjek deleted the move-malignant-sigs-to-extrasigs branch June 29, 2026 09:16
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