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bionsbm

Graph-based topic modelling for the integration single-cell multi-omica data

Installation

conda create --name gt -c conda-forge graph-tool

conda activate gt

pip install git+https://github.com/gmalagol10/bionsbm

Usage

import bionsbm
from muon import read_h5mu

mdata = read_h5mu("Test_data.h5mu")

model = bionsbm.model.bionsbm(obj=mdata, saving_path="results/mybionsbm")

model.fit(n_init=1, verbose=False)

Version History

  • 0.1
    • Initial Release

License

This project is licensed under the GNU General Public License v3.0 - see the LICENSE.md file for details

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  • Jupyter Notebook 97.8%
  • Python 2.2%