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ahernank merged 2 commits into from
Jun 26, 2026
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Update As1.0 guide to link studies to webpages #148

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jonbrenas Jun 25, 2026
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jonbrenas Jun 25, 2026
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63 changes: 18 additions & 45 deletions docs/as1/as1.0.ipynb
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Expand Up @@ -49,63 +49,38 @@
"id": "iNSicUCtpk8j"
},
"source": [
"<a name=\"studies\"></a>\n",
"## Partner studies\n",
"\n",
"The samples were contributed by partner institutions from various countries. The surname and primary institution of the lead principle investigator/s contributing samples to the study, and the sample country of origin, are detailed below. \n",
"### Wild-collected samples\n",
"\n",
"Enquiries about the samples and studies may be directed in the first instance to Tristan Dennis (tristan.dennis@lstmed.ac.uk), David Weetman (david.weetman@lstmed.ac.uk) or Martin Donnelly (martin.donnelly@lstmed.ac.uk).\n",
"- [1363-VO-ET-GADISA](https://www.malariagen.net/partner_study/1363-vo-et-gadisa/) - _Anopheles stephensi_ vector surveillance in Ethiopia\n",
"\n",
"### 1363-VO-ET-GADISA-VMF00316 (Ethiopia)\n",
"- [1364-VO-SD-KAFY](https://www.malariagen.net/partner_study/1364-vo-sd-kafy/) - _Anopheles stephensi_ vector surveillance in Sudan\n",
"\n",
"* Endalamaw Gadisa, Armaeur Hansen Research Institute, Ethiopia.\n",
"- [1365-VO-DJ-ADBI](https://www.malariagen.net/partner_study/1365-vo-dj-abdi/) - _Anopheles stephensi_ vector surveillance in Djibouti\n",
"\n",
"### 1364-VO-SD-KAFY-VMF00317 (Sudan)\n",
"- [1366-VO-YE-ALLAN](https://www.malariagen.net/partner_study/1366-vo-ye-allan/) - _Anopheles stephensi_ vector surveillance in Yemen\n",
"\n",
"* Hmooda Toto Kafy, University of Khartoum, Sudan.\n",
"* Elfatih Malik, University of Khartoum, Sudan.\n",
"- [1367-VO-AF-DONNELLY](https://www.malariagen.net/partner_study/1367-vo-af-donnelly/) - _Anopheles stephensi_ vector surveillance in Afghanistan\n",
"\n",
"### 1365-VO-DJ-ADBI-VMF00318 (Djibouti)\n",
"- [1368-VO-PK-DONNELLY](https://www.malariagen.net/partner_study/1368-vo-pk-donnelly/) - _Anopheles stephensi_ vector surveillance in Pakistan\n",
"\n",
"* Bouh Abdi Khaireh, Association Mutualis, Djibouti.\n",
"- [1369-VO-SA-AL-NAZAWI](https://www.malariagen.net/partner_study/1369-vo-sa-al-nazawi/) - _Anopheles stephensi_ vector surveillance in Saudi Arabia\n",
"\n",
"### 1366-VO-YE-ALLAN-VMF00319 (Yemen)\n",
"- [1370-VO-IR-ENAYATI](https://www.malariagen.net/partner_study/1370-vo-ir-enayati/) - _Anopheles stephensi_ vector surveillance in Iran\n",
"\n",
"* Richard Allan, MENTOR Initiative, United Kingdom.\n",
"- [1386-VO-KE-OCHOMO](https://www.malariagen.net/partner_study/1386-vo-ke-ochomo/) - _Anopheles stephensi_ vector surveillance in Kenya\n",
"\n",
"### 1367-VO-AF-DONNELLY-VMF00320 (Afghanistan)\n",
"- [1458-VO-ET-YEWHALAW](https://www.malariagen.net/partner_study/1458-vo-et-yewhalaw/) - _Anopheles stephensi_ vector surveillance in Ethiopia\n",
"\n",
"* Martin Donnelly, Liverpool School of Tropical Medicine, United Kingdom.\n",
"- [1459-VO-SD-AHMED](https://www.malariagen.net/partner_study/1459-vo-sd-ahmed/)- _Anopheles stephensi_ vector surveillance in Sudan\n",
"\n",
"### 1368-VO-PK-DONNELLY-VMF00321 (Pakistan)\n",
" \n",
"### Laboratory colonies derived from wild-collected samples\n",
"\n",
"* Martin Donnelly, Liverpool School of Tropical Medicine, United Kingdom.\n",
"\n",
"### 1369-VO-SA-AL-NAZAWI-VMF00322 (Saudi Arabia)\n",
"\n",
"* Ashwaq Al-Nazawi, Jazan University, Saudi Arabia. \n",
"\n",
"### 1370-VO-IR-ENAYATI-VMF00323 (Iran)\n",
"\n",
"* Ahmadali Enayati, Mazandaran University of Medical Sciences, Iran.\n",
"\n",
"### 1385-VO-DJ-WEETMAN-VMF00338 (United Kingdom).\n",
"\n",
"* David Weetman, Liverpool School of Tropical Medicine, United Kingdom.\n",
"* N.B. These are colony mosquitoes derived from wild-collected samples in Djibouti.\n",
"\n",
"### 1386-VO-KE-OCHOMO-VMF00339 (Kenya)\n",
"\n",
"* Eric Ochomo, Kenya Medical Research Institute (KEMRI), Kenya\n",
"\n",
"### 1458-VO-ET-YEWHALAW-VMF00340 (Ethiopia)\n",
"\n",
"* Delenasaw Yewhalaw, Jimma University, Ethiopia.\n",
"\n",
"### 1459-VO-SD-AHMED-VMF00342\n",
"\n",
"* Ayman Ahmed, University of Khartoum, Sudan.\n",
" \n"
"- [1385-VO-DJ-WEETMAN](https://www.malariagen.net/partner_study/1385-vo-dj-weetman/) - _Anopheles stephensi_ vector surveillance in Djibouti\n",
" \n",
"Enquiries about the samples and studies may be directed in the first instance to Tristan Dennis (tristan.dennis@lstmed.ac.uk), David Weetman (david.weetman@lstmed.ac.uk) or Martin Donnelly (martin.donnelly@lstmed.ac.uk)."
]
},
{
Expand All @@ -115,9 +90,7 @@
"## Literature sample sets\n",
"This release also includes data from one study openly available in the literature: \n",
"\n",
"### thakare-2022\n",
"\n",
"* Previously published data from [Thakare _et al_, 2022](https://www.nature.com/articles/s41598-022-07462-3)."
"- thakare-2022 - [Thakare _et al_, 2022](https://www.nature.com/articles/s41598-022-07462-3)."
]
},
{
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