BioBloom 🌿🫀

Microalgae as a Source of Bioactive Compounds in Pharmacology

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Overview

BioBloom is a research project exploring microalgae proteomes as a source of bioactive peptides with pharmacological potential (especially ACE inhibitors for cardiovascular health).

This repository provides a collection of scripts for:

• querying BIOPEP-UWM,
• peptide filtering & ADMET screening,
• SMILES/FASTA/PDB conversions,
• peptide/receptor structure generation for docking.

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Repository Structure

• biopep_uwm/ → BIOPEP-UWM automation
• admet/ → unify and filter ADMET outputs
• molecular_docking/ → peptide & receptor structure prep
• pLM4ACE/ → input/output formatting for pLM4ACE model
• smiles_conversion/ → utilities for FASTA/SMILES conversion

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Documentation

See Wiki for full documentation:

• detailed script descriptions,
• requirements,
• usage examples,
• full pipeline workflow.