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Upgrade to Snakemake v9.17.0

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CI on: push 4

lint

vars

build (linux/amd64)

build (linux/arm64)

merge-builds

test (linux/amd64)

test (linux/arm64)

Validate platforms

push-branch

push-build

test-pathogen-repo-ci-v0 (avian-flu) / configuration

test-pathogen-repo-ci-v0 (avian-flu) / build (docker)

test-pathogen-repo-ci-v0 (ncov) / configuration

test-pathogen-repo-ci-v0 (ncov) / build (docker)

test-pathogen-repo-ci-v0 (rsv) / configuration

test-pathogen-repo-ci-v0 (rsv) / build (docker)

test-pathogen-repo-ci-v0 (seasonal-flu) / configuration

test-pathogen-repo-ci-v0 (seasonal-flu) / build (docker)

test-pathogen-repo-ci (dengue) / configuration

test-pathogen-repo-ci (dengue) / workflow-context

test-pathogen-repo-ci (dengue) / build (docker)

test-pathogen-repo-ci (lassa) / configuration

test-pathogen-repo-ci (lassa) / workflow-context

test-pathogen-repo-ci (lassa) / build (docker)

test-pathogen-repo-ci (measles) / configuration

test-pathogen-repo-ci (measles) / workflow-context

test-pathogen-repo-ci (measles) / build (docker)

test-pathogen-repo-ci (mpox) / configuration

test-pathogen-repo-ci (mpox) / workflow-context

test-pathogen-repo-ci (mpox) / build (docker)

test-pathogen-repo-ci (mumps) / configuration

test-pathogen-repo-ci (mumps) / workflow-context

test-pathogen-repo-ci (mumps) / build (docker)

test-pathogen-repo-ci (nipah) / configuration

test-pathogen-repo-ci (nipah) / workflow-context

test-pathogen-repo-ci (nipah) / build (docker)

test-pathogen-repo-ci (norovirus) / configuration

test-pathogen-repo-ci (norovirus) / workflow-context

test-pathogen-repo-ci (norovirus) / build (docker)

test-pathogen-repo-ci (oropouche) / configuration

test-pathogen-repo-ci (oropouche) / workflow-context

test-pathogen-repo-ci (oropouche) / build (docker)

test-pathogen-repo-ci (rabies) / configuration

test-pathogen-repo-ci (rabies) / workflow-context

test-pathogen-repo-ci (rabies) / build (docker)

test-pathogen-repo-ci (rubella) / configuration

test-pathogen-repo-ci (rubella) / workflow-context

test-pathogen-repo-ci (rubella) / build (docker)

test-pathogen-repo-ci (seasonal-cov) / configuration

test-pathogen-repo-ci (seasonal-cov) / workflow-context

test-pathogen-repo-ci (seasonal-cov) / build (docker)

test-pathogen-repo-ci (WNV) / configuration

test-pathogen-repo-ci (WNV) / workflow-context

test-pathogen-repo-ci (WNV) / build (docker)

test-pathogen-repo-ci (yellow-fever) / configuration

test-pathogen-repo-ci (yellow-fever) / workflow-context

test-pathogen-repo-ci (yellow-fever) / build (docker)

test-pathogen-repo-ci (zika) / configuration

test-pathogen-repo-ci (zika) / workflow-context

test-pathogen-repo-ci (zika) / build (docker)

cleanup-registry

CI on: pull_request