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Upgrade to Snakemake v9.17.0 #289

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Merged
joverlee521 merged 1 commit into from
Jun 22, 2026
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Upgrade to Snakemake v9.17.0 #289

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5 changes: 3 additions & 2 deletions Dockerfile
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Expand Up @@ -250,8 +250,9 @@ RUN python3 -m venv /usr/local/libexec/awscli \
&& ln -sv /usr/local/libexec/awscli/bin/aws /usr/local/bin/aws

# Install Snakemake and related optional dependencies.
# Pinned to 9.6.2 for stability (latest version on 2025-07-03)
RUN pip3 install snakemake[reports]==9.6.2
# Pinned to 9.17.0 for stability, latest guaranteed compatible version
# based on <https://github.com/nextstrain/public/issues/39>
RUN pip3 install snakemake[reports]==9.17.0
# Snakemake plugins for remote storage providers
# Pinned for stability (latest versions on 2025-07-03)
RUN pip3 install snakemake-storage-plugin-http==0.3.0
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