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@BaroudLab Physical Microfluidics and Bioengineering, Institut Pasteur

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    20 repositories

    • Bacterial-Colony-Formation

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Aug 10, 2026Aug 10, 2026

    • APC-mutation-T-cells

      Public
      Jupyter Notebook
      •0•0•0•1•Updated Jul 27, 2026Jul 27, 2026

    • Deformable-Chip-Designs

      Public
      CAD files to the molds of the chips presented in "Designing single-layer PDMS devices for micron to millimeter-scale deformations".
      0•0•0•0•Updated Jun 3, 2026Jun 3, 2026

    • anchor-droplet-chip

      Public
      Analyse achored droplets data
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated Dec 28, 2025Dec 28, 2025

    • zarr-tools

      Public
      Convert nd2 to zarr
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•1•Updated Dec 28, 2025Dec 28, 2025

    • Pyxidis

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Dec 20, 2025Dec 20, 2025

    • Bacterial-Morphology

      Public
      Code relating to the manuscript "Extending digital biology: bacterial survival and morphological heterogeneity under antibiotic stress"
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 3, 2025Oct 3, 2025

    • Microfluidic-design-T-cells-coculture

      Public
      0•0•0•0•Updated Feb 11, 2025Feb 11, 2025

    • Stem-Cell-Organoid-Chip-Design

      Public
      3D Printable mechanical drawings for the droplet chip used for the culture of stem cell derived organoids
      0•1•0•0•Updated Jan 31, 2025Jan 31, 2025

    • MechanoChip

      Public
      Design of micro-device for mechano-biology
      MIT License
      •0•1•0•0•Updated Jan 31, 2025Jan 31, 2025

    • stl

      Public
      Collection of 3D designs for 3D printing
      MIT License
      •0•0•0•0•Updated Feb 6, 2024Feb 6, 2024

    • vizarr

      Public
      A minimal, purely client-side program for viewing Zarr-based images with Viv & ImJoy.
      TypeScript
      •
      MIT License
      •41•0•0•0•Updated Oct 20, 2023Oct 20, 2023

    • napari-griottes

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•3•1•0•Updated Apr 14, 2023Apr 14, 2023

    • Griottes

      Public
      Python program to generate NetworkX graphs from segmented images.
      Jupyter Notebook
      •
      MIT License
      •4•14•0•0•Updated Apr 14, 2023Apr 14, 2023

    • imreg_dft_aa

      Public
      Image registration using discrete Fourier transform.
      Python
      •
      Other
      •71•0•0•0•Updated Mar 6, 2023Mar 6, 2023

    • screening-spheoroids-analysis

      Public
      Code associated with the article by R. Fèvre et al.
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Dec 2, 2022Dec 2, 2022

    • Griottes_paper

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 21, 2022Mar 21, 2022

    • CTL_analysis

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 3, 2022Mar 3, 2022

    • CTL_tracking_in_droplets

      Public
      Python
      •0•0•0•0•Updated Mar 3, 2022Mar 3, 2022

    • tutorials

      Public
      0•0•0•0•Updated Feb 22, 2022Feb 22, 2022
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