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1. CryptoBench CryptoBench Public

   Scripts for the creation of CryptoBench, a new dataset of cryptic binding sites

   Jupyter Notebook 13

2. seq2pocket seq2pocket Public

   Seq2Pocket is a framework for transforming residue-level protein language model predictions into 3D binding pockets via embedding-supported smoothing and surface-based clustering.

   Jupyter Notebook 3 2

3. esm2-generator esm2-generator Public

   How to generate ESM2 embeddings on CPU/GPU or by utilizing a SLURM-equipped cluster.

   Python 1 1

4. simple-GAUK-template simple-GAUK-template Public

   Simple LaTeX template for GAUK proposal at Charles University

   TeX

5. siret-junior/ranking-server siret-junior/ranking-server Public

   A server for ranking the dataset by a text query.

   Python 4

6. siret-junior/som-collector siret-junior/som-collector Public

   A tool for interaction log collection in limited SOMHunter evnironment.

   C++ 2