Repositories list

• SzRs

  Public
  Python

  •0•0•0•0•Updated Mar 3, 2026Mar 3, 2026

• opsintools

  Public
  Python

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Feb 19, 2026Feb 19, 2026

• run_deep_tmhmm

  Public
  Python

  •0•0•0•0•Updated Feb 2, 2026Feb 2, 2026

• opsintools-build

  Public
  Python

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Dec 24, 2025Dec 24, 2025

• cyanoXRs

  Public
  Python

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Nov 13, 2025Nov 13, 2025

• RhodopsinProfiles

  Public
  Rhodopsin domain extraction workflow

  Python

  •1•2•1•1•Updated Nov 6, 2025Nov 6, 2025

• T7_nblA

  Public
  Python

  •0•1•0•0•Updated Jun 22, 2025Jun 22, 2025

• Kariarchaeaceae

  Public
  Structural insights into light harvesting by antenna-containing rhodopsins in marine Asgard archaea. Bioinformatic Workflow

  Python

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated May 16, 2025May 16, 2025

• HulaCCR1

  Public
  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

• ACRs

  Public
  HTML

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  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 4, 2024Oct 4, 2024

• TAT

  Public
  Python

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Sep 13, 2024Sep 13, 2024

• BLASSO-Rhodopsin

  Public
  Wrapper for BLASSO-for-Rhodopsins

  Python

  •

  Creative Commons Attribution 4.0 International

  •1•1•0•0•Updated Aug 22, 2024Aug 22, 2024

• cymbomonas-genome

  Public
  Python

  •0•0•0•0•Updated Oct 1, 2023Oct 1, 2023

• cymbomonas-viruses

  Public
  Python

  •0•0•0•0•Updated Oct 1, 2023Oct 1, 2023

• phaeocystis-viral-elements

  Public
  Python

  •0•0•0•0•Updated Jan 3, 2023Jan 3, 2023

• Gezelvirus

  Public
  Phaeocystis viruses

  Python

  •0•0•0•0•Updated Jan 3, 2023Jan 3, 2023

• antenna

  Public
  R

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  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Dec 4, 2022Dec 4, 2022

• ViralHeRs

  Public
  Python

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  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Aug 18, 2022Aug 18, 2022

• pelagisphaera

  Public
  R

  •0•0•0•0•Updated Aug 10, 2022Aug 10, 2022

• fosmids

  Public
  Fosmid assembly annotation

  Perl

  •0•0•0•0•Updated Jul 24, 2022Jul 24, 2022

• RRB

  Public
  JavaScript

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  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 3, 2022Apr 3, 2022

• Hula-Heliorhodopsins

  Public
  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 14, 2021Nov 14, 2021

• RhodopsinsReview

  Public
  GNU General Public License v3.0

  •1•0•0•0•Updated Aug 11, 2021Aug 11, 2021

• PoV-01B

  Public
  Pyramimonas orientalis genome assembly pipeline

  Perl

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated May 24, 2021May 24, 2021

• FosmidPlacer

  Public
  Phylogenetic placement for environmental DNA fragments

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Feb 10, 2021Feb 10, 2021

• nblA

  Public
  Shell

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 30, 2020Jul 30, 2020

• MerMAIDs

  Public
  R

  •0•0•0•0•Updated Mar 13, 2019Mar 13, 2019

• helio_tax

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Nov 23, 2018Nov 23, 2018

• heliorhodopsin

  Public
  Scripts used in the analysis of the paper: "A distinct abundant group of microbial rhodopsins discovered via functional metagenomics".

  Jupyter Notebook

  •0•0•0•0•Updated Jun 21, 2018Jun 21, 2018

• Magrovirus

  Public
  Scripts used in the analysis of the paper: "Novel Abundant Oceanic Viruses of Uncultured Marine Group II Euryarchaeota Identified by Genome-Centric Metagenomics…

  Jupyter Notebook

  •0•0•0•0•Updated May 27, 2018May 27, 2018