Search results

refactor output formats

Status: Open.

#89 In DeshpandeLab/SpaceMarkers;

· dimalvovs opened on Dec 19, 2025

allow underscores in cell names

Status: Open.

#86 In DeshpandeLab/SpaceMarkers;

· dimalvovs opened on Dec 16, 2025

Inherit SpaceMarkers object from SpatialExperiment and add wrapper compatibility functions

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#85 In DeshpandeLab/SpaceMarkers;

· atuldeshpande opened on Dec 9, 2025

SpaceMarkers v2

Status: Open.

#74 In DeshpandeLab/SpaceMarkers;

· dimalvovs opened on Sep 25, 2025

Two different pipelines between undirected and directed SpaceMarkers

Status: Open.

#73 In DeshpandeLab/SpaceMarkers;

· orian116 opened on Sep 12, 2025

Visium HD compatibility issues

Status: Open.

#66 In DeshpandeLab/SpaceMarkers;

· dimalvovs opened on May 2, 2025

Parallel findAllHotspots

Status: Open.

#60 In DeshpandeLab/SpaceMarkers;

· dimalvovs opened on Jan 10, 2025

Match default vignette with paper vignette

Status: Open.

#46 In DeshpandeLab/SpaceMarkers;

· atuldeshpande opened on Nov 1, 2024

Updating getSpatialParametersExternal and vignette for consistency

Status: Open.

#45 In DeshpandeLab/SpaceMarkers;

· atuldeshpande opened on Nov 1, 2024

function to access IMscores

Status: Open.

#25 In DeshpandeLab/SpaceMarkers;

· dimalvovs opened on Sep 6, 2024

Inconsistent output dimensions when running getPairwiseInteractions

Status: Open.

#24 In DeshpandeLab/SpaceMarkers;

· atuldeshpande opened on Sep 4, 2024

get Spatial Parameters from JSON file by default

Status: Open.

#23 In DeshpandeLab/SpaceMarkers;

· atuldeshpande opened on Aug 28, 2024